DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and Gbx1

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_001258382.1 Gene:Gbx1 / 246149 RGDID:621864 Length:425 Species:Rattus norvegicus


Alignment Length:421 Identity:102/421 - (24%)
Similarity:145/421 - (34%) Gaps:155/421 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SPANSDVSVGSP----------SPPPLRSLNMKRLRLLRSPISLEHDRQKSSPVRVKSFSIADIL 61
            :|..|..|.|.|          .|||.||   ..|.....|:.:.:                   
  Rat    69 APGGSGGSGGGPGTAFSIDSLIGPPPPRS---GHLLYTGYPMFMPY------------------- 111

  Fly    62 GRGHEEDRVEKKPERIAIPNALPGVPAPLALINERLQIPLVPNCPPPAALHTFLSPALLHSYEQR 126
                       :|  :.:|.||...|.|..|              ||      |:|  |.|:..|
  Rat   112 -----------RP--LVLPQALAPAPLPAGL--------------PP------LAP--LASFAGR 141

  Fly   127 LAWDYQRQLQEHFQAQAQLLRQMTLNPAIIASED---GSSERSQRSSSSNGSTECCSPTQ----- 183
            |:..:...|.   ||...::...|..|:.....|   |..|.:..::::..||...|..:     
  Rat   142 LSNTFCAGLG---QAVPSMVALTTALPSFAEPPDAYYGPPELAAAAAAAAASTVSRSNPEPPARR 203

  Fly   184 -------------AEKVEK--------------------------RSQEDRMEVPKKSP---EEQ 206
                         .|||.:                          .|.|:::|.|...|   |.:
  Rat   204 TDGALDADELLPAREKVTEPPPPPPPPPPHFSETFPSLPAEGKVYSSDEEKLEPPAGEPAGSEPE 268

  Fly   207 PKGASKSSGDTPLD-------ALFQLSTK------NFDEEQDPATLNIFATRSNP-KKKRKSRTA 257
            .:|:...|.|:.||       ||.....|      ...||..|....:    :.| .|.|:.|||
  Rat   269 EEGSGGDSEDSFLDSSAGGPGALLGPKPKLKGSLGTGAEEGTPVATGV----TTPGGKSRRRRTA 329

  Fly   258 FTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRDMEELKKDVQCEKI 322
            ||::|:.||||.|..:||||..:|.:||..|.||..||..||||||||.||        ::...:
  Rat   330 FTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR--------IKAGNV 386

  Fly   323 PDQSADPNRS---------HHNHPHYHQQHQ 344
            ..:|.:|.|:         |.|......|||
  Rat   387 SSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQ 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 49/139 (35%)
Homeodomain 252..308 CDD:459649 32/55 (58%)
Gbx1NP_001258382.1 Homeodomain 324..380 CDD:459649 32/55 (58%)

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