DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and Nkx2-4

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_075993.1 Gene:Nkx2-4 / 228731 MGIID:97349 Length:354 Species:Mus musculus


Alignment Length:296 Identity:72/296 - (24%)
Similarity:109/296 - (36%) Gaps:81/296 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 SPVRVKSFSIADILGRGHEEDRVEKKPERI--AIPNALPGVPAPLALINERLQIPLVPNCP---- 106
            ||.....||::|||      ..:|:..::.  .:..|.||:.|||.....|..    |:.|    
Mouse     4 SPKHTTPFSVSDIL------SPIEETYKKFGGVMDGAPPGLGAPLGAAAYRAP----PSGPSSQA 58

  Fly   107 --------PPAAL--HTFLSPALLHSYEQRLAWDYQRQLQEHFQAQAQLLRQMTLNPAIIASEDG 161
                    ||.|:  |...:.|...:.....|..|.                  :.|.:      
Mouse    59 AAVAAGMQPPHAMAGHNAAAAAAAAAAAAAAAATYH------------------MPPGV------ 99

  Fly   162 SSERSQRSSSSNGSTECCSPTQAEKVEKRSQEDRME---------------VPKKSPEEQPKGAS 211
                ||...|:.||  .|:.......|..:..|.|.               .|:.|...:..|.|
Mouse   100 ----SQFPHSAMGS--YCNGGLGNMGELPAYTDGMRGGAAAAATGWYGANTDPRYSSISRFMGPS 158

  Fly   212 KSSGDTPLDALFQLSTKNFDEEQDPATLNIFATRSNPKKKRKSRTAFTNQQIFELEKRFLYQKYL 276
            .......:.:|..::    |..:..|.|:..|.|      ||.|..|:..|::|||:||..||||
Mouse   159 AGVNVAGMGSLTGIA----DAAKSLAPLHAAAPR------RKRRVLFSQAQVYELERRFKQQKYL 213

  Fly   277 SPADRDEIAGGLGLSNAQVITWFQNRRAKLKRDMEE 312
            |..:|:.:|..:.|:..||..||||.|.|:||..::
Mouse   214 SAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 36/107 (34%)
Homeodomain 252..308 CDD:459649 26/55 (47%)
Nkx2-4NP_075993.1 Homeodomain 189..245 CDD:459649 26/55 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 245..329 1/5 (20%)

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