DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and Nkx2-6

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_035050.2 Gene:Nkx2-6 / 18092 MGIID:97351 Length:289 Species:Mus musculus


Alignment Length:180 Identity:50/180 - (27%)
Similarity:81/180 - (45%) Gaps:25/180 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   140 QAQAQLLRQMTL--NPAIIASEDGSSERSQRSSSSNGSTECCSPTQAEKVEKRSQEDRMEVPKKS 202
            |..::.|.|..|  ||.        ..|..|.:..:|..|  |..:|:.|..|...:.:.....:
Mouse    23 QKDSKTLSQWELHRNPV--------KPRYLRMNQESGWFE--SSDRAQAVPFRCTWETVLEMGSN 77

  Fly   203 PEEQPKGASKSSGDTPLDALFQLSTKNFDEEQDPATLNIFATRSNP-----KKKRKSRTAFTNQQ 262
            |..:|:        ||...:.:|..:|...::....|:....|..|     :.:||||..|:..|
Mouse    78 PVGEPQ--------TPPGTISRLGARNPMTDRGVGNLSGDMRRGGPVSTRTRPQRKSRVLFSQAQ 134

  Fly   263 IFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRDMEE 312
            :..||:||..|:||:..:|:.:|..|.|::.||..||||||.|.|...::
Mouse   135 VLALERRFKQQRYLTAPEREHLASALQLTSTQVKIWFQNRRYKSKSQRQD 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 35/112 (31%)
Homeodomain 252..308 CDD:459649 26/55 (47%)
Nkx2-6NP_035050.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 75..125 9/57 (16%)
Homeodomain 124..179 CDD:459649 26/54 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 259..289
Blue background indicates that the domain is not in the aligned region.

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