DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbl and vab-7

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_499401.1 Gene:vab-7 / 176521 WormBaseID:WBGene00006873 Length:247 Species:Caenorhabditis elegans


Alignment Length:112 Identity:37/112 - (33%)
Similarity:53/112 - (47%) Gaps:23/112 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   210 ASKSSGDTPLDALFQLSTKNFDEE-QDP------ATLNIFATRSNP------KKKRKSRTAFTNQ 261
            ||::|..:|          .|::: .||      |.....|.|.:|      .:.|:.||||:.:
 Worm    24 ASRASSFSP----------PFEQQHHDPMGVVAAAAAAAAAGRHHPYDNRDDGQMRRYRTAFSRE 78

  Fly   262 QIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKR 308
            ||..||:.|..:.|:|...|.|:|..|.|....:..||||||.|.||
 Worm    79 QIGRLEREFAKENYVSRKTRGELAAELNLPEGTIKVWFQNRRMKDKR 125

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 37/112 (33%)
Homeodomain 252..308 CDD:459649 24/55 (44%)
vab-7NP_499401.1 Homeodomain 69..125 CDD:459649 24/55 (44%)

Return to query results.
Submit another query.