DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and Hoxc8

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_034596.1 Gene:Hoxc8 / 15426 MGIID:96198 Length:242 Species:Mus musculus


Alignment Length:127 Identity:39/127 - (30%)
Similarity:61/127 - (48%) Gaps:27/127 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   245 RSNPKKKRKSRTAFTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRD 309
            |.:...:|..|..::..|..||||.||:..||:...|.|::..|||:..||..||||||.|.|: 
Mouse   143 RPHAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKK- 206

  Fly   310 MEELKKDVQCEKIPDQSADPNRSHHNHPHYHQQHQHYAHMQSIGSDRDMDKDRCREKEKDKD 371
              |..||    |:|. :.|..:                 ::..|::.:..::  .|||::||
Mouse   207 --ENNKD----KLPG-ARDEEK-----------------VEEEGNEEEEKEE--EEKEENKD 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 33/86 (38%)
Homeodomain 252..308 CDD:459649 25/55 (45%)
Hoxc8NP_034596.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..154 2/10 (20%)
Antp-type hexapeptide 138..143 39/127 (31%)
Homeodomain 150..206 CDD:459649 25/55 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 206..242 10/62 (16%)

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