DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and Hoxb4

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_034589.3 Gene:Hoxb4 / 15412 MGIID:96185 Length:250 Species:Mus musculus


Alignment Length:245 Identity:61/245 - (24%)
Similarity:83/245 - (33%) Gaps:95/245 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 PGVPAPLALINERLQIPLVPNCPPPAALHTFLSPALLHSYEQRLAWDYQRQLQEHFQAQAQLLRQ 148
            ||.|.|          |..|..|||..    |||                              :
Mouse    71 PGPPPP----------PPPPPPPPPPG----LSP------------------------------R 91

  Fly   149 MTLNPAIIASEDGSSERSQRSSSSNGSTECCSPTQAEKVEKRSQEDRMEVPKKSPEEQPKGASKS 213
            ..:.|...|......:||:..|||.....|            :|......|..|..::|      
Mouse    92 APVQPTAGALLPEPGQRSEAVSSSPPPPPC------------AQNPLHPSPSHSACKEP------ 138

  Fly   214 SGDTPLDALFQLSTKNFDEEQDPATLNIFATRSNPK----KKRKSRTAFTNQQIFELEKRFLYQK 274
                   .::            |....:..:..||.    :.::||||:|.||:.||||.|.|.:
Mouse   139 -------VVY------------PWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNR 184

  Fly   275 YLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRDMEELKKDVQCEKIPD 324
            ||:...|.|||..|.||..|:..||||||.|.|:|          .|:|:
Mouse   185 YLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKD----------HKLPN 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 38/123 (31%)
Homeodomain 252..308 CDD:459649 30/55 (55%)
Hoxb4NP_034589.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..133 22/117 (19%)
Antp-type hexapeptide 140..145 1/16 (6%)
Homeodomain 162..218 CDD:459649 30/55 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..250 3/16 (19%)

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