DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and Hoxa3

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_034582.1 Gene:Hoxa3 / 15400 MGIID:96175 Length:443 Species:Mus musculus


Alignment Length:306 Identity:66/306 - (21%)
Similarity:101/306 - (33%) Gaps:113/306 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 SVGSPSP----PPLRSLNMKRLRLLRSPISLEHDRQKSSPVRVKSFSIADILGRGHEEDRVEKKP 74
            |:.||:.    |....|:...||.|..|        .|.|             .|..|..:...|
Mouse    52 SLQSPASAGGHPKTHELSEACLRTLSGP--------PSQP-------------PGLGEPPLPPPP 95

  Fly    75 ERIAIPNALPGVPAPLALINERLQIPLVPNCP----PPAALHTFLSPALLHSYEQRLAWDYQRQL 135
            .:.|.|...|..|.|    ......|..|..|    ||.:.::..:||                 
Mouse    96 PQAAPPAPQPPQPPP----QPPAPTPAAPPPPSSVSPPQSANSNPTPA----------------- 139

  Fly   136 QEHFQAQAQLLRQMTLNPAIIASEDGSSERSQRSSSSNGSTECCSPTQAEKVEKRSQEDRMEVPK 200
               ..|::.||...|:...|......|.:.:::.:|.:.|.|.|                     
Mouse   140 ---STAKSPLLNSPTVGKQIFPWMKESRQNTKQKTSGSSSGESC--------------------- 180

  Fly   201 KSPEEQPKGASKSSGDTPLDALFQLSTKNFDEEQDPATLNIFATRSNPKKKRKSRTAFTNQQIFE 265
             :.::.|.|.:.|                                      :::|||:|:.|:.|
Mouse   181 -AGDKSPPGQASS--------------------------------------KRARTAYTSAQLVE 206

  Fly   266 LEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRDME 311
            |||.|.:.:||....|.|:|..|.|:..|:..||||||.|.|:|.:
Mouse   207 LEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 30/106 (28%)
Homeodomain 252..308 CDD:459649 25/55 (45%)
Hoxa3NP_034582.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 74..151 23/121 (19%)
Antp-type hexapeptide 156..161 1/4 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..197 8/93 (9%)
COG5576 <182..309 CDD:227863 30/109 (28%)
Homeodomain 193..249 CDD:459649 25/55 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..354 2/5 (40%)
DUF4074 378..441 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..443
Blue background indicates that the domain is not in the aligned region.

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