DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and Cdx4

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_031700.1 Gene:Cdx4 / 12592 MGIID:88362 Length:282 Species:Mus musculus


Alignment Length:171 Identity:47/171 - (27%)
Similarity:70/171 - (40%) Gaps:52/171 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 TLNPAIIASEDGS-SERSQRS--SSSNGSTECCSPTQAEKVEKRSQEDRMEVPKKSPEEQPKGAS 211
            ||.|...||..|| .:.:..|  |..:|::...||:::               :.||....:...
Mouse   113 TLGPTSGASNGGSLPDAASESLVSLDSGTSGATSPSRS---------------RHSPYAWMRKTV 162

  Fly   212 KSSGDTPLDALFQLSTKNFDEEQDPATLNIFATRSNPKKKRKSRTAFTNQQIFELEKRFLYQKYL 276
            :.:|.|                               :.|.|.|..:|:.|..||||.|...:|:
Mouse   163 QVTGKT-------------------------------RTKEKYRVVYTDHQRLELEKEFHCNRYI 196

  Fly   277 SPADRDEIAGGLGLSNAQVITWFQNRRAKLKRDMEELKKDV 317
            :...:.|:|..||||..||..|||||||| :|.|  :||.:
Mouse   197 TIRRKSELAVNLGLSERQVKIWFQNRRAK-ERKM--IKKKI 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 33/112 (29%)
Homeodomain 252..308 CDD:459649 26/55 (47%)
Cdx4NP_031700.1 Caudal_act 13..168 CDD:461413 15/69 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 13..36
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 98..156 14/57 (25%)
Homeodomain 173..228 CDD:459649 26/55 (47%)
Blue background indicates that the domain is not in the aligned region.

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