DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and Hoxa3

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_001300749.1 Gene:Hoxa3 / 103690130 RGDID:1561431 Length:444 Species:Rattus norvegicus


Alignment Length:234 Identity:55/234 - (23%)
Similarity:84/234 - (35%) Gaps:79/234 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 PNALPGVPAPLALINERLQIPLVPNCPPPAA--LHTFLSPALLHSYEQRLAWDYQRQLQEHFQAQ 142
            |.|.|..|.|       .|.|..|..|.|||  ..:.:||....:.....|          ..|:
  Rat    96 PQAAPPAPQP-------PQPPPQPPAPTPAAPPPPSSVSPPQSANSNPTPA----------STAK 143

  Fly   143 AQLLRQMTLNPAIIASEDGSSERSQRSSSSNGSTECCSPTQAEKVEKRSQEDRMEVPKKSPEEQP 207
            :.||...|:...|......|.:.:::.:|.:.|.|.|                      :.::.|
  Rat   144 SPLLNSPTVGKQIFPWMKESRQNTKQKTSGSSSGESC----------------------AGDKSP 186

  Fly   208 KGASKSSGDTPLDALFQLSTKNFDEEQDPATLNIFATRSNPKKKRKSRTAFTNQQIFELEKRFLY 272
            .|.:.|                                      :::|||:|:.|:.||||.|.:
  Rat   187 PGQASS--------------------------------------KRARTAYTSAQLVELEKEFHF 213

  Fly   273 QKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRDME 311
            .:||....|.|:|..|.|:..|:..||||||.|.|:|.:
  Rat   214 NRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863 30/106 (28%)
Homeodomain 252..308 CDD:459649 25/55 (45%)
Hoxa3NP_001300749.1 COG5576 <182..309 CDD:227863 30/109 (28%)
Homeodomain 193..249 CDD:459649 25/55 (45%)
DUF4074 378..442 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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