DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbl and hoxa4

DIOPT Version :10

Sequence 1:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster
Sequence 2:XP_004915454.1 Gene:hoxa4 / 101734089 XenbaseID:XB-GENE-486676 Length:251 Species:Xenopus tropicalis


Alignment Length:183 Identity:39/183 - (21%)
Similarity:69/183 - (37%) Gaps:39/183 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LAIERLFGVAAAAFRASVQQYDIRPLNL------PLAGTVGTNTSNAGPVPKSPEYRVHRTV--- 78
            |..|.|...|...|....:.::| |:|.      .:.|.|..|....  :..:|..||..|.   
 Frog   285 LQAEELHEKALDPFLLQAEFFEI-PMNFVDPKEYDIPGLVRKNRYKT--ILPNPHSRVCLTSPDP 346

  Fly    79 --PYRTYASAAIIKKKKMLAKLTEAQRTELLTPLFAAGWTMVKDRDAIYKEYLFGDFNEAFGFMT 141
              |..:|.:|..|:......|:..|.:..:::.: |..|.||      ::|:     ......:|
 Frog   347 DDPLSSYINANYIRGYGGEEKVYIATQGPIVSTV-ADFWRMV------WQEH-----TPIIVMIT 399

  Fly   142 RVALKADK-MDHHPEWFNVYNKVQVT----LATHDC--------AGLSERDVK 181
            .:....:| .::.||....|:.|::|    :.|.|.        :|..||.:|
 Frog   400 NIEEMNEKCTEYWPEEQVAYDGVEITVQKVIHTEDYRLRLISLKSGTEERGLK 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lblNP_001262805.1 COG5576 206..332 CDD:227863
Homeodomain 252..308 CDD:459649
hoxa4XP_004915454.1 Homeodomain 158..214 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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