Protein Alignment bap and Cdx2

DIOPT Version :9

• Sequence 1: NP_732637.1
• Gene: bap / 42537
• FlyBaseID: FBgn0004862
• Length: 382
• Species: Drosophila melanogaster
• Sequence 2: NP_076453.1
• Gene: Cdx2 / 66019
• RGDID: 621234
• Length: 310
• Species: Rattus norvegicus
• Alignment Length: 282
• Identity: 66/282 - (23%)
• Similarity: 102/282 - (36%)
• Gaps: 116/282 - (41%)

  Fly    92 SNYLQYYAAAMDNNNHHHQATGTSNSSAADYMQRKLAYFGSTLAAPLDMRRCTSNDSDCDSPPPL 156
            |:..:|:|....:::.||.|  .:.|.|:..:|                   |.|    ..||..
  Rat   107 SSPAEYHAHHHPHHHPHHPA--AAPSCASGLLQ-------------------TLN----PGPPGP 146

  Fly   157 SSSPSESPLSHDGS----------------GLSRKKRS----RAAFSHAQVFELERRFAQQRYLS 201
            :::.:...||..|.                |...|.|:    |..::..|..|||:.|...||::
  Rat   147 AATAAAEQLSPSGQRRNLCEWMRKPAQPSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYIT 211

  Fly   202 GPERSEMAKSLRLTETQVKIWFQNRRYKTK---RKQIQQHEAALLGASKRVPVQVLVREDGSTTY 263
            ...::|:|.:|.|:|.||||||||||.|.:   :|::||.:      .::.|
  Rat   212 IRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQ------QQQPP------------- 257

  Fly   264 AHMAAPGAGHGLDPALINIYRHQLQLAYGGLPLPQMQMPFPYFYPQ----HKVPQPIPPPTQSSS 324
                ||                         |.||...      ||    ..||:|:.|
  Rat   258 ----AP-------------------------PPPQPSQ------PQSGALRSVPEPLSP------ 281

  Fly   325 FVTASSASSSPVPIPIPGAVRP 346
             ||:...|   ||..:||.:.|
  Rat   282 -VTSLQGS---VPGSVPGVLGP 299

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bap	NP_732637.1	Homeobox	178..231	CDD:278475	24/56 (43%)
Cdx2	NP_076453.1	Caudal_act	13..170	CDD:282574	16/87 (18%)
		Homeobox	189..241	CDD:278475	24/51 (47%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910