DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment bap and Hoxa13

DIOPT Version :9

Sequence 1:	NP_732637.1	Gene:	bap / 42537	FlyBaseID:	FBgn0004862	Length:	382	Species:	Drosophila melanogaster
Sequence 2:	NP_001258284.1	Gene:	Hoxa13 / 500129	RGDID:	1562483	Length:	386	Species:	Rattus norvegicus

Alignment Length:	174	Identity:	47/174 - (27%)
Similarity:	72/174 - (41%)	Gaps:	36/174 - (20%)

- Green bases have known domain annotations that are detailed below.

  Fly    82 KEIQPSARQPSNYLQYYAAAMDNNNHHHQATGTSNSSAADYMQRK----LAYFGSTLAAPLDM-- 140
            :|....|::.:.|.|.|||   ...||||       ....|:...    |...|.:...||.:
  Rat   217 EEFSSRAKEFAFYHQGYAA---GPYHHHQ-------PVPGYLDMPVVPGLGGPGESRHEPLGLPM 271

  Fly   141 ---------------RRCTSNDSDCDSPPPLSSSPSESPLSH--DGSGLSRKKRSRAAFSHAQVF 188
                           ..|....:   .||.|..|.....:||  |.|...|.::.|..::..|:.
  Rat   272 ESYQPWALPNGWNGQMYCPKEQT---QPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLK 333

  Fly   189 ELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKR 232
            ||||.:|..::::..:|..::.:..|:|.||.|||||||.|.|:
  Rat   334 ELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
bap	NP_732637.1	Homeobox	178..231	CDD:278475	20/52 (38%)
Hoxa13	NP_001258284.1	HoxA13_N	85..220	CDD:289085	1/2 (50%)
Hoxa13	NP_001258284.1	HOX	320..376	CDD:197696	20/55 (36%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910