DRSC/TRiP Functional Genomics Resources

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Protein Alignment bap and nkx2.2b

DIOPT Version :9

Sequence 1:NP_732637.1 Gene:bap / 42537 FlyBaseID:FBgn0004862 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_001007783.2 Gene:nkx2.2b / 493627 ZFINID:ZDB-GENE-050217-3 Length:237 Species:Danio rerio


Alignment Length:303 Identity:89/303 - (29%)
Similarity:119/303 - (39%) Gaps:101/303 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 KSLTTPFSINDILTRSNPETRRMSSVDSEPEPEKLKPSSDRERSISKSPPLCCRDLGLYKLTQPK 82
            |:..:.|::.|||  ..|:|....||..:.|.|                    :|.||       
Zfish     4 KNSKSGFTVRDIL--DLPDTNDEGSVSEDTEDE--------------------QDEGL------- 39

  Fly    83 EIQPSARQPSNYLQYYAAAMDNNNHHHQATGTSNSSAADYMQRKLAYFGSTL--------AAPLD 139
                                 |.|...|     :.|:.|.:     :.||:.        |:|.:
Zfish    40 ---------------------NANQKKQ-----HDSSRDAL-----WLGSSCGHKYPVPSASPEE 73

  Fly   140 MRRCTSNDSDCDSPPPLSSSPSESPLSHDGSGLSRKKRSRAAFSHAQVFELERRFAQQRYLSGPE 204
            :.            |.||:..|....|.:.||  :|::.|..||..|.|||||||.||||||.||
Zfish    74 LN------------PELSADESVDRESSEDSG--KKRKRRILFSKTQTFELERRFRQQRYLSAPE 124

  Fly   205 RSEMAKSLRLTETQVKIWFQNRRYKTKRKQIQQHEAALLGASKRVPVQVLVREDGSTTYAHMAAP 269
            |..:||.|.||.|||||||||.|||.||.:.::.....|.:.:||.:.|||| ||..  .|:..|
Zfish   125 REHLAKLLHLTPTQVKIWFQNHRYKVKRARAEKGLDPYLLSPRRVSIPVLVR-DGRP--CHLLGP 186

  Fly   270 -GAGHGLDPALINIYRHQLQLAYGGLPLPQMQM-PFPYFYPQH 310
             .....:.||.              .|.....| |||..:..|
Zfish   187 QDITASIPPAT--------------APFTAFNMKPFPQIHHSH 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bapNP_732637.1 Homeobox 178..231 CDD:278475 37/52 (71%)
nkx2.2bNP_001007783.2 Homeobox 98..151 CDD:278475 37/52 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D450160at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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