DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bap and nkx6.1

DIOPT Version :9

Sequence 1:NP_732637.1 Gene:bap / 42537 FlyBaseID:FBgn0004862 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_001002475.1 Gene:nkx6.1 / 436748 ZFINID:ZDB-GENE-040718-178 Length:312 Species:Danio rerio


Alignment Length:266 Identity:68/266 - (25%)
Similarity:99/266 - (37%) Gaps:105/266 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SAGVSAAMAGLSKSLTTPFSINDILTRSNPETRRMSSVDSEPEPEKLKPSSDRERSISKSPPLCC 70
            |:|:||..:....::.||..|||||:|.:...          .|..:.....|..|:|..||   
Zfish    72 SSGLSALASAQQCAIATPHGINDILSRPSVAC----------SPAGILSGLPRFSSLSPPPP--- 123

  Fly    71 RDLGLYKLTQPKEIQPSARQPSNYLQYYAAAMDNNNHHHQATGTSNSSAADYMQRKLAYFGSTLA 135
                                |..|....|||:               :.|.|             
Zfish   124 --------------------PGLYFSPSAAAV---------------AVARY------------- 140

  Fly   136 APLDMRRCTSNDSDCDSPPPLSSSPSESPL-------------------SHDGSGL----SRKKR 177
                             |.||:..|..:|:                   .|..|.|    .::|.
Zfish   141 -----------------PKPLTELPGRTPIFWPGVMQSPHWRDARFACSPHQNSVLLDKDGKRKH 188

  Fly   178 SRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRKQIQQHEAAL 242
            :|..||..|:|.||:.|.|.:||:||||:.:|.||.:||:|||:||||||.|.:::    |.|.:
Zfish   189 TRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKR----HAAEM 249

  Fly   243 LGASKR 248
            ..|.|:
Zfish   250 ASAKKK 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bapNP_732637.1 Homeobox 178..231 CDD:278475 30/52 (58%)
nkx6.1NP_001002475.1 Homeobox 189..242 CDD:278475 30/52 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.