DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bap and hoxd3a

DIOPT Version :10

Sequence 1:NP_732637.1 Gene:bap / 42537 FlyBaseID:FBgn0004862 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_571200.1 Gene:hoxd3a / 30349 ZFINID:ZDB-GENE-990415-120 Length:396 Species:Danio rerio


Alignment Length:339 Identity:87/339 - (25%)
Similarity:121/339 - (35%) Gaps:108/339 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 CCRDLGLYKLTQPKEIQPSARQPSNYLQYYAAAMDNNNHHHQATGTSNSSAADYMQRKLAYFGST 133
            |.|.......:||:.|  |.:|.:..|...:.:...|:...:.:.:||              ||:
Zfish    68 CMRPSASQGNSQPESI--SEQQQAAPLAASSPSPSTNSTQKKKSPSSN--------------GSS 116

  Fly   134 LAAPLDMRR------------------CTSNDSDCD--SPPPLSSSPSESPLSHDGSGLSRKKRS 178
            .|.|:..::                  |.:....||  |||        .|.|         ||.
Zfish   117 TATPVISKQIFPWMKETRQNAKQKSTNCPAAGETCDDKSPP--------GPAS---------KRV 164

  Fly   179 RAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRKQIQQHEAALL 243
            |.|::.||:.|||:.|...|||..|.|.|||..|.|||.|:||||||||.|.|:.|         
Zfish   165 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQ--------- 220

  Fly   244 GASKRVPVQVLVREDGSTTYAHMAAPGAGHGLD--PALINIYRHQLQLAYGGLPLPQMQMPFPYF 306
             .||.:                |.:| .||..|  |.|..    ...:.|.| .||.:. ...|.
Zfish   221 -KSKGI----------------MHSP-LGHSPDRSPPLSG----SNHIGYSG-QLPNVN-SLSYD 261

  Fly   307 YPQHKVPQPIPPPTQSSSFVTASSASSSPVPIPIPGAVRPQRTPCPSP---------NGQMMSVE 362
            .|.   |.....|.|:...:.|.:|       |:.|.: ||:...|..         ||...:..
Zfish   262 APS---PPSFAKPQQNIYGLAAYTA-------PLGGCI-PQQKRYPGTEYDHHSMQGNGSFANAN 315

  Fly   363 SGAESVHSAAEDVD 376
            ..:..|:.....||
Zfish   316 LQSSPVYVGGNFVD 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bapNP_732637.1 Homeodomain 176..232 CDD:459649 32/55 (58%)
hoxd3aNP_571200.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 18..163 23/127 (18%)
COG5576 116..237 CDD:227863 51/164 (31%)
Antp-type hexapeptide 126..131 0/4 (0%)
Homeodomain 162..218 CDD:459649 32/55 (58%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..246 10/57 (18%)
DUF4074 333..394 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 364..396
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.