DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bap and Lbx2

DIOPT Version :9

Sequence 1:NP_732637.1 Gene:bap / 42537 FlyBaseID:FBgn0004862 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_034822.1 Gene:Lbx2 / 16815 MGIID:1342288 Length:195 Species:Mus musculus


Alignment Length:233 Identity:69/233 - (29%)
Similarity:89/233 - (38%) Gaps:86/233 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 TPFSINDILTRSNPETRRMSSVDSEPEPEKLKPSSDRERSISKSPPLCCRDLGLYKLTQPKEIQP 86
            |||||.|||   .|     |.|...|...:|.     |.....:.|||    .|.:|.....:..
Mouse     9 TPFSIADIL---GP-----SMVPEAPSAPQLP-----EAGPDPASPLC----ALEELASKTFLGH 56

  Fly    87 SAR---QPSNYLQYYAAAMDNNNHHHQATGTSNSSAADYMQRKLAYFGSTLAAPLDMRRCTSNDS 148
            |.|   |||                                       ...|||           
Mouse    57 SPRATPQPS---------------------------------------EGRAAP----------- 71

  Fly   149 DCDSPPPLSSSPSESPLSHDGSGLSRKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLR 213
              ::||        .|    |:|:.|:::||.||:..||.||||||..|:||:..||..:|..|.
Mouse    72 --EAPP--------GP----GAGVRRRRKSRTAFTAQQVLELERRFVFQKYLAPSERDGLAARLG 122

  Fly   214 LTETQVKIWFQNRRYKTKR--KQIQQHEAALLGASKRV 249
            |...||..||||||.|.||  ::::...|:|.|.|..|
Mouse   123 LANAQVVTWFQNRRAKLKRDVEEMRADVASLCGLSPGV 160

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bapNP_732637.1 Homeobox 178..231 CDD:278475 29/52 (56%)
Lbx2NP_034822.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..89 34/160 (21%)
Homeobox 87..140 CDD:278475 29/52 (56%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 164..195
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.