DRSC/TRiP Functional Genomics Resources

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Protein Alignment bap and Hoxd3

DIOPT Version :10

Sequence 1:NP_732637.1 Gene:bap / 42537 FlyBaseID:FBgn0004862 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_034598.2 Gene:Hoxd3 / 15434 MGIID:96207 Length:433 Species:Mus musculus


Alignment Length:352 Identity:92/352 - (26%)
Similarity:130/352 - (36%) Gaps:78/352 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 VDSEPEPEKLKPSSDRERSISKSPPLCCRDLGLYKLTQPKEIQPSARQPSNYLQYYAAAMDNNNH 107
            ::||.:|.:..|           ||             |..:.||:  |:|......|.....  
Mouse   110 LNSEQQPPQPPP-----------PP-------------PPTLPPSS--PTNPGSGVPAKKTKG-- 146

  Fly   108 HHQATGTSNSSAADYMQRKL-AYFGSTLAAPLDMRRCTSNDSDC-DSPPPLSSSPSESPLSHDGS 170
                 |.|.||::..:.::: .:...:.........|.::..:| |..||       .|.|    
Mouse   147 -----GLSASSSSSTISKQIFPWMKESRQNSKQKNSCATSGENCEDKSPP-------GPAS---- 195

  Fly   171 GLSRKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRKQI 235
                 ||.|.|::.||:.|||:.|...|||..|.|.|||..|.|||.|:||||||||.|.|:.|.
Mouse   196 -----KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 255

  Fly   236 QQ---HEAALLGASKRVPVQVLVREDGSTTYAHMAAPGAGHGLD----PALINIYRHQLQLAYGG 293
            .:   |..|.....:..|   |....|...|:....|..|...|    ||......:...||...
Mouse   256 AKGILHSPAGQSPERSPP---LGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYT 317

  Fly   294 LPL-----PQMQMPFPYFYPQHKVPQPIPPPTQSSSFVTASSASSSPVPIPIPGAVRPQRTPCPS 353
            .||     .|.:.|.|.|       :|.|..:....|.:|:...|   |:.:.|.......|...
Mouse   318 APLSSCLPQQKRYPAPEF-------EPHPMASNGGGFASANLQGS---PVYVGGNFVDSMAPTSG 372

  Fly   354 P--NGQMMSVESGAESVHSAAEDVDEN 378
            |  |...:|..|.|...:|.|..:..|
Mouse   373 PVFNLGHLSHPSSASVDYSCAAQIPGN 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bapNP_732637.1 Homeodomain 176..232 CDD:459649 32/55 (58%)
Hoxd3NP_034598.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 44..198 24/136 (18%)
Antp-type hexapeptide 161..166 0/4 (0%)
Homeodomain 196..252 CDD:459649 32/55 (58%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 258..280 4/24 (17%)
DUF4074 370..431 CDD:463833 8/30 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..433
Blue background indicates that the domain is not in the aligned region.

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