DRSC/TRiP Functional Genomics Resources

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Protein Alignment bap and Lhx5

DIOPT Version :9

Sequence 1:NP_732637.1 Gene:bap / 42537 FlyBaseID:FBgn0004862 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_620605.1 Gene:Lhx5 / 124451 RGDID:71079 Length:402 Species:Rattus norvegicus


Alignment Length:349 Identity:76/349 - (21%)
Similarity:118/349 - (33%) Gaps:105/349 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 ERSISKSPPLCCRD----------LGLYKLTQPKEIQPSARQPSNYLQYYAAAMDNNNHHHQATG 113
            |:..|:...|.|::          .|..:...|.::...||....:|..:...:.|.   ..:||
  Rat    41 EKCFSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNK---QLSTG 102

  Fly   114 ------TSNSSAA--DYMQRKLAYFGSTLAAPLDMRRCTSNDSDCDSPPPLSSSPSESPLS---- 166
                  ..|....  ||:.......||..:    :..||......|...||...|.|:..|    
  Rat   103 EELYVIDENKFVCKDDYLSSSSLKEGSLNS----VSSCTDRSLSPDLQDPLQDDPKETDNSTSSD 163

  Fly   167 ---------HDGSGLSRKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIW 222
                     ...|| ::::..|......|:..|:..||.....:...|.::|:...|....:::|
  Rat   164 KETANNENEEQNSG-TKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVW 227

  Fly   223 FQNRRYKTKR-KQIQQHEAALLGASKRV---------PVQVLVRED---GSTTYAHMA------- 267
            |||||.|.:| ||:     :.|||.:..         |:...:.|.   |||.|.:..       
  Rat   228 FQNRRSKERRMKQL-----SALGARRHAFFRSPRRMRPLGGRLDESEMLGSTPYTYYGDYQSDYY 287

  Fly   268 APGAGHGLDPALINIYRHQLQLAYGGLPLPQMQMPFPYFYPQHKVPQPIPPPTQSSSFVTASSAS 332
            |||..:..             .|:|  |..|.|.|                  ..|||:.||...
  Rat   288 APGGNYDF-------------FAHG--PPSQAQSP------------------ADSSFLAASGPG 319

  Fly   333 SSPVPIPIPGAVRPQRTPCPSPNG 356
            |:|:     ||:.|   |...|:|
  Rat   320 STPL-----GALEP---PLAGPHG 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bapNP_732637.1 Homeobox 178..231 CDD:278475 15/52 (29%)
Lhx5NP_620605.1 LIM1_Lhx1_Lhx5 5..56 CDD:188753 4/14 (29%)
LIM2_Lhx1_Lhx5 64..119 CDD:188761 9/57 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 124..186 13/66 (20%)
Homeobox 183..237 CDD:395001 15/53 (28%)
PHA03378 <247..>392 CDD:223065 28/130 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 298..402 18/66 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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