Protein Alignment bap and Hoxa3

DIOPT Version :10

• Sequence 1: NP_732637.1
• Gene: bap / 42537
• FlyBaseID: FBgn0004862
• Length: 382
• Species: Drosophila melanogaster
• Sequence 2: NP_001300749.1
• Gene: Hoxa3 / 103690130
• RGDID: 1561431
• Length: 444
• Species: Rattus norvegicus
• Alignment Length: 307
• Identity: 79/307 - (25%)
• Similarity: 109/307 - (35%)
• Gaps: 104/307 - (33%)

  Fly    47 PEPEKLKP-----SSDRERSISKSPPLCCRDLGLYKLTQPKEIQPSARQPSNYLQYYAAAMDNNN 106
            |.|..:.|     |:....|.:|||.|....:|       |:|.|..::            ...|
  Rat   121 PPPSSVSPPQSANSNPTPASTAKSPLLNSPTVG-------KQIFPWMKE------------SRQN 166

  Fly   107 HHHQATGTSNSSAADYMQRKLAYFGSTLAAPLDMRRCTSNDSDCDSPPPLSSSPSESPLSHDGSG 171
            ...:.:|:|:..:                       |..     |..||               |
  Rat   167 TKQKTSGSSSGES-----------------------CAG-----DKSPP---------------G 188

  Fly   172 LSRKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRKQIQ 236
            .:..||:|.|::.||:.|||:.|...|||..|.|.|||..|.|||.|:||||||||.|.|:.|..
  Rat   189 QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKG 253

  Fly   237 QHEAALLGASKRVPVQVLVREDGSTTYAHMAAPGAGHGLDP--ALINIYRHQLQLAYGGLPLPQM 299
            :              .:|....|.:.......||||..|:.  :|:|...::          ||.
  Rat   254 K--------------GMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYE----------PQS 294

  Fly   300 QMPF------PYFYPQHKVPQPI-----PPPTQSSSFVTASSASSSP 335
            ..||      .|..|....|.|:     |||.|.......|.|..:|
  Rat   295 PPPFSKPPQGAYGLPPASYPAPLPSCAPPPPPQKRYTAAGSGAGGTP 341

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bap	NP_732637.1	Homeodomain	176..232	CDD:459649	32/55 (58%)
Hoxa3	NP_001300749.1	COG5576	<182..309	CDD:227863	52/170 (31%)
		Homeodomain	193..249	CDD:459649	32/55 (58%)
		DUF4074	378..442	CDD:463833