DRSC/TRiP Functional Genomics Resources

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Protein Alignment tin and lbx2

DIOPT Version :10

Sequence 1:NP_524433.1 Gene:tin / 42536 FlyBaseID:FBgn0004110 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_001007135.1 Gene:lbx2 / 64276 ZFINID:ZDB-GENE-001206-2 Length:257 Species:Danio rerio


Alignment Length:255 Identity:66/255 - (25%)
Similarity:102/255 - (40%) Gaps:72/255 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 LNSSAE------VDSLQAPTQKLCVNPLSQRLMETASNSSSLRSIYGSDEGAKKKDNSQVTSSRS 276
            |.||.|      :|.|..|...  ..||:...:|...|..|::...||  ....:...:||.|.:
Zfish    14 LQSSGEERRRGPLDQLPPPANS--NKPLTPFSIEDILNKPSVKKSVGS--LCPPRVLEKVTGSSA 74

  Fly   277 ELRKNSISGNSNP--------------------------------GSNSGSTKPRMKRKPRVLFS 309
            .  :|.||..|:|                                |....|.|   :||.|..|:
Zfish    75 S--RNGISAPSSPLCALEELASKTFKGLEVSVIQAAEGREHINAFGQRQASKK---RRKSRTAFT 134

  Fly   310 QAQVLELECRFRLKKYLTGAEREIIAQKLNLSATQVKIWFQNRRYKSKR------GDIDC----- 363
            ..|:.|||.||..:|||:.|:|:.|||:|.|:..||..||||||.|.||      .|::.     
Zfish   135 NHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRDLEEMKADVESLKKIP 199

  Fly   364 -EGIAKHLKLK--------SEPLDSPTSLPPPIPNHVMWPPTMQQSQQQQQHHAQQQQMQ 414
             :.:.|.:.::        |.|: ||:..|...|.    .|:..:.|...:...:.::::
Zfish   200 PQALQKLVSMEDMEDAHGGSGPI-SPSLSPRAFPQ----SPSSSRGQTTDEFSEEDEEIE 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tinNP_524433.1 Homeodomain 302..358 CDD:459649 29/55 (53%)
lbx2NP_001007135.1 Required for convergent extension movement and hypaxial myogenesis during gastrulation. Required for the formation of thick and thin myofilaments. Required for myod1 expression in the pectoral fin bud. Required for continuous expression of cxcl12a in the posterior lateral mesoderm at the tail bud stage and in adaxial cells at the 10-somite stage. /evidence=ECO:0000269|PubMed:19216761, ECO:0000269|PubMed:22216300, ECO:0000269|PubMed:22406073 1..46 9/33 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..43 9/30 (30%)
Homeodomain 127..183 CDD:459649 29/55 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 206..257 8/54 (15%)

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