DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tin and Vsx1

DIOPT Version :9

Sequence 1:NP_524433.1 Gene:tin / 42536 FlyBaseID:FBgn0004110 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_001284898.1 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster


Alignment Length:643 Identity:124/643 - (19%)
Similarity:192/643 - (29%) Gaps:292/643 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 TPFSVKDILNMVNQTEAYEGSYGHIDGAATASAL-----------------------FAAGEYQN 77
            |||::::||.:        |:|   ...|||||.                       .:|.:.|.
  Fly     8 TPFAIQEILGL--------GAY---QQQATASATPSEAPPSPAATPPPTANTPANGSLSAVQQQQ 61

  Fly    78 PHQYLNHQQHQQSELPIPQQQLHHQHLDDGATTSSSLSP-------------------LLP---P 120
            ..|    ||.||.:..:.|||   |...|....|.|:||                   .||   |
  Fly    62 QQQ----QQQQQQQQQLQQQQ---QQAIDSLRESRSISPDVSRLSAAAAAAAAAAAHCQLPVFNP 119

  Fly   121 PPHQLYGGYQDYGMPAHMFQHHHGH--------------------PHQ---SF-QHSASAYNMSA 161
            .......||.....|.:....||.|                    ||:   .| ||..:.:...|
  Fly   120 ANFYAAAGYAAAADPGNAAAAHHHHMTTLAAAAYLRGFLPPGFSTPHEFRGHFQQHFGAQFAEQA 184

  Fly   162 S---QFYAGASATA---YQTP-----ATYNYNYAGSGEVYGGATPSAVGIKSEYIPTPYVT---- 211
            :   |.||.:.|.|   .|:|     ::.|....|||...||..|::.|:  .::.:|..:    
  Fly   185 AARGQEYASSLANASGDEQSPSKNSSSSGNGGSGGSGSGSGGGNPTSNGL--GHLGSPTASNGGS 247

  Fly   212 -----------PSPTLDLNSSAEVD--------SLQAP-----TQKLCVNPLSQRLMETA----- 247
                       .|.|...|||...:        |..:|     :..|..:..:......|     
  Fly   248 GGGAGVGGSGGGSGTSGSNSSTSGNGGNGGSSGSRSSPAGPHHSAALAAHQHAAAAAAAAHHHAA 312

  Fly   248 -----------------------------------SNSSSLRSIYGSDEGAKKKDNSQVTSSRSE 277
                                               :::....:..|:..||....||.:.:...:
  Fly   313 AAAAAHHAHHAHAQAHAHAHAHVHAHAAHAAHAAHAHAHHAEAFLGAAGGAGGNPNSLLAAHGGD 377

  Fly   278 LRKNSISGNSNPGSNSGSTKPRMKRKPRVLFSQAQVLELECRFRLKKYLTGAEREIIAQKLNLSA 342
            :    :.|..  |:..|..|...:|..|.:|:.:|:.|||..|:...|...:.||:::.|..|:.
  Fly   378 V----LVGPG--GTGPGGKKKNKRRHGRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAE 436

  Fly   343 TQVKIWFQNRRYKSKRGDIDCEG---------------------------------------IAK 368
            .::::|:||||.|.::.: .|.|                                       :..
  Fly   437 DRIQVWYQNRRAKWRKTE-KCWGHSTKMAEYGLYGAMVRHSLPLPETIIKSAKEDESVAPWLLGM 500

  Fly   369 HLK-------LKSEPLD--SPTS----------------------------LPPPIPN------- 389
            |.|       |||:..|  :|||                            .|||...       
  Fly   501 HKKSLEAAELLKSDESDRETPTSDDTNTSYSAGSTHNSPISSFSISRLLFDAPPPAAGSAGGKGH 565

  Fly   390 -----------------------HVM--WPPTMQQSQQQQQHH---------AQQQQM 413
                                   |::  .....||.|||||||         .||||:
  Fly   566 HHHHHHHKGHHHAHVHAQAQAHAHMLLHHQQQQQQQQQQQQHHHHLHAAENSLQQQQV 623

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tinNP_524433.1 HOX 301..357 CDD:197696 19/55 (35%)
Vsx1NP_001284898.1 Homeobox 399..451 CDD:278475 18/51 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 73 1.000 Inparanoid score I2435
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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