DRSC/TRiP Functional Genomics Resources

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Protein Alignment tin and CDX1

DIOPT Version :10

Sequence 1:NP_524433.1 Gene:tin / 42536 FlyBaseID:FBgn0004110 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_001795.2 Gene:CDX1 / 1044 HGNCID:1805 Length:265 Species:Homo sapiens


Alignment Length:303 Identity:78/303 - (25%)
Similarity:108/303 - (35%) Gaps:100/303 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 SPLLPPP--PHQLYGGYQDYGMPA---------HMFQHHHGHPHQSFQHSASAYNMSASQFYAGA 168
            ||:.|.|  |..|..|.|.||.||         ....:.|..|                   |.|
Human    11 SPVYPGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEP-------------------APA 56

  Fly   169 SATAYQTP---------ATYNYNYAGSGEVYGGATPS--AVGIKSEYIPTPYVTPSPTLDLNSSA 222
            ..||:..|         |.|     |.|.....|:|:  |.|...::.|.| ..|.|...|    
Human    57 PPTAWGAPFPAPKDDWAAAY-----GPGPAAPAASPASLAFGPPPDFSPVP-APPGPGPGL---- 111

  Fly   223 EVDSLQAPTQKLCVNPLSQRLMETASNSSSLRSIYGSDEGAKKKDNSQVTSSRSELRKNSISGNS 287
                            |:|.|....:.||         .||::       .:..|..:.|::.  
Human   112 ----------------LAQPLGGPGTPSS---------PGAQR-------PTPYEWMRRSVAA-- 142

  Fly   288 NPGSNSGSTKPRMKRKPRVLFSQAQVLELECRFRLKKYLTGAEREIIAQKLNLSATQVKIWFQNR 352
              |...||.|.|.|.|.||:::..|.||||..|...:|:|...:..:|..|.|:..|||||||||
Human   143 --GGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNR 205

  Fly   353 RYKSKRGDIDCEGIAKHLKLKSEPLDSPTSLPPPIPNHVMWPP 395
            |.|.::.:          |.|.:....|   .||:.:.:...|
Human   206 RAKERKVN----------KKKQQQQQPP---QPPMAHDITATP 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tinNP_524433.1 Homeodomain 302..358 CDD:459649 25/55 (45%)
CDX1NP_001795.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 9..153 45/206 (22%)
Caudal_act 13..142 CDD:461413 39/189 (21%)
Homeodomain 156..211 CDD:459649 25/54 (46%)
Interaction with DNA. /evidence=ECO:0000305|PubMed:28473536 157..178 8/20 (40%)
Interaction with 5-mCpG DNA. /evidence=ECO:0000305|PubMed:28473536 196..207 9/10 (90%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 207..265 7/42 (17%)

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