DRSC/TRiP Functional Genomics Resources

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Protein Alignment tin and Hoxa1

DIOPT Version :10

Sequence 1:NP_524433.1 Gene:tin / 42536 FlyBaseID:FBgn0004110 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_037207.2 Gene:Hoxa1 / 103690132 RGDID:11414885 Length:334 Species:Rattus norvegicus


Alignment Length:328 Identity:88/328 - (26%)
Similarity:118/328 - (35%) Gaps:82/328 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 DDGATT--SSSLSPLLPPPPHQLYGGYQDYGMPAHMFQHHHGHPHQSFQHSASAYNMSASQFYAG 167
            |.|.||  |.::|........:..||........|...|||.||..:...::....:|.|....|
  Rat    31 DHGITTFQSCAVSANSCGGDDRFLGGRGVQITSPHHHHHHHHHPQPATYQTSGNLGVSYSHSSCG 95

  Fly   168 ASATAYQTPATYN-YNYAGSGEVYGGATPSAVGIKS-------------------------EYIP 206
            .|..|....|.|. |......:|.||..|.|..:.|                         :||.
  Rat    96 PSYGAQNFSAPYGPYGLNQEADVSGGYPPCAPAVYSGNLSSPMVQHHHHHQGYAGGTVGSPQYIH 160

  Fly   207 TPYVTPSPTLDL---NSSAEVDSLQAPTQKLCVNPLSQRLMETASNSSSLRSIYGSDEGAKKKDN 268
            ..|.....:|.|   |:|  :..|.|..|:.|.:|.|    ||:|.:.:.       :..|.|.|
  Rat   161 HSYGQEHQSLALATYNNS--LSPLHASHQEACRSPAS----ETSSPAQTF-------DWMKVKRN 212

  Fly   269 SQVTSSRSEL----RKNSISGNSNPGSNSGSTKPRMKRKPRVLFSQAQVLELECRFRLKKYLTGA 329
            ...|....|.    :.|::..|                     |:..|:.|||..|...||||.|
  Rat   213 PPKTGKVGEYGYVGQPNAVRTN---------------------FTTKQLTELEKEFHFNKYLTRA 256

  Fly   330 EREIIAQKLNLSATQVKIWFQNRRYKSKRGDIDCEGIA-----------KHLKLKSEPLDSPTSL 383
            .|..||..|.|:.|||||||||||.|.|:.  :.||:.           :..:..||...|..|.
  Rat   257 RRVEIAASLQLNETQVKIWFQNRRMKQKKR--EKEGLLPISPATPPGSDEKTEESSEKSSSSPSA 319

  Fly   384 PPP 386
            |.|
  Rat   320 PSP 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tinNP_524433.1 Homeodomain 302..358 CDD:459649 28/55 (51%)
Hoxa1NP_037207.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 61..82 6/20 (30%)
Interaction with OGT. /evidence=ECO:0000250|UniProtKB:P09022 74..202 31/133 (23%)
COG5576 175..>285 CDD:227863 46/143 (32%)
Antp-type hexapeptide 203..208 0/11 (0%)
Homeodomain 232..285 CDD:459649 29/73 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 280..334 11/45 (24%)

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