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Protein Alignment tin and nkx2-6
DIOPT Version :9
Sequence 1: | NP_524433.1 |
Gene: | tin / 42536 |
FlyBaseID: | FBgn0004110 |
Length: | 416 |
Species: | Drosophila melanogaster |
Sequence 2: | XP_002932599.1 |
Gene: | nkx2-6 / 100038094 |
XenbaseID: | XB-GENE-486951 |
Length: | 254 |
Species: | Xenopus tropicalis |
Alignment Length: | 164 |
Identity: | 58/164 - (35%) |
Similarity: | 76/164 - (46%) |
Gaps: | 33/164 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 242 RLMETASNSSSLRSIYGSDE---GAKKKD--------------NSQVTSSRSELRKNSISGNSNP 289
||......|:.:||..|:|. ||.::| :.|:........::...|....
Frog 18 RLENGQVGSAPVRSHPGTDPLLIGAARRDPIERDRESPGAFCQSPQIEDPDFAQEQSGYFGGLGR 82
Fly 290 GSNSGSTKPRMKRKPRVLFSQAQVLELECRFRLKKYLTGAEREIIAQKLNLSATQVKIWFQNRRY 354
|........|.:|||||||||.||.|||.||:.::||:..|||.:|..|.|::||||||||||||
Frog 83 GGPQEQLHHRQRRKPRVLFSQMQVFELERRFKQQRYLSAPEREQLALALKLTSTQVKIWFQNRRY 147
Fly 355 KSKRGDIDCEGIAKHLKLKSEPLDSPTSLPPPIP 388
|.|| :..|....|..|||
Frog 148 KCKR----------------QKQDRSLELGHPIP 165
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
tin | NP_524433.1 |
HOX |
301..357 |
CDD:197696 |
37/55 (67%) |
nkx2-6 | XP_002932599.1 |
Homeobox |
97..151 |
CDD:365835 |
35/53 (66%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
Panther |
1 |
1.100 |
- |
- |
LDO |
PTHR24340 |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
3 | 3.010 |
|
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