DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SIFaR and AstA-R1

DIOPT Version :10

Sequence 1:NP_650966.2 Gene:SIFaR / 42530 FlyBaseID:FBgn0038880 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_524700.1 Gene:AstA-R1 / 44126 FlyBaseID:FBgn0266429 Length:394 Species:Drosophila melanogaster


Alignment Length:406 Identity:111/406 - (27%)
Similarity:203/406 - (50%) Gaps:63/406 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 LLATLAATTTASARGSLA-GKSLAIADATSSTYYSNLLNLSPATTSLISAAAATKSYNDSALRWE 187
            |||||.::...::.|:.. |..:::::::.:.|                  |.|..:.|.:  ..
  Fly    10 LLATLISSWPKASWGATGNGSIISVSNSSGNNY------------------AFTSEHTDHS--DH 54

  Fly   188 QLDGSVDFGFDPLYRHSLAMSMVYCVAYIVVFLVGLIGNSFVIAVVLRAPRMRTVTNYFIVNLAI 252
            ..:.|:::..:.:....: :|.:..|.:.::...||:||..||.||:...:||:.||..|:|||:
  Fly    55 NANDSMEYDAESVALERI-VSTIVPVFFGIIGFAGLLGNGLVILVVVANQQMRSTTNLLIINLAV 118

  Fly   253 ADILVIVFCLPATLIGNIFVPWMLGWLMCKFVPYIQGVSVAASVYSLIAVSLDRFIAIWWPLKQM 317
            :|||.::||:|.|....:...|..|.:.||||.|:..|:...|||:|:.:|.|||:|:..|:..|
  Fly   119 SDILFVIFCVPFTATDYVLPEWPFGNVWCKFVQYMIVVTCHCSVYTLVLMSFDRFLAVVHPVTSM 183

  Fly   318 ---TKRRARIMIIGIWVIALVTTIPWLLFFDLVPAEEVFSDALVSAYSQPQFLCQEVWPPGTDGN 379
               |:|.|.:.|:..|:..:.|.||..|... |...:...:|..:.....:   :|:|     ..
  Fly   184 SLRTERNATLAIMCAWITIVTTAIPVALSHS-VRIYQYHGNAGTACVFSTE---EEIW-----SL 239

  Fly   380 LYFLLANLVACYLLPMSLITLCYV----LIWIKVSTRSIPGESKDAQMDRMQQKSKVKVIKMLVA 440
            :.|.::..::.|:.|::||...|:    .:|     :|.||....|:    .:|.|.:|.:|:|.
  Fly   240 VGFQVSFFLSSYVAPLTLICFLYMGMLARLW-----KSAPGCKPSAE----SRKGKRRVTRMVVV 295

  Fly   441 VVILFVLSWLPLYVIFA----RIKFGSDISQEEFEILKKVMPVAQWLGSSNSCINPILYS-VNKK 500
            ||:.|.:.|||::||..    .:..||.:|    .|::.:..|..:   :|||||||||: ::..
  Fly   296 VVLAFAICWLPIHVILVLKALNLYGGSHLS----VIIQIISHVVAY---TNSCINPILYAFLSDN 353

  Fly   501 YRRGFAAIIKSRSCCG 516
            :|:.|..::    .||
  Fly   354 FRKAFRKVV----WCG 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SIFaRNP_650966.2 7tmA_CCKR-like 209..505 CDD:320124 95/307 (31%)
TM helix 1 210..236 CDD:320124 9/25 (36%)
TM helix 2 243..269 CDD:320124 13/25 (52%)
TM helix 3 281..311 CDD:320124 15/29 (52%)
TM helix 4 322..340 CDD:320124 5/17 (29%)
TM helix 5 379..404 CDD:320124 6/28 (21%)
TM helix 6 429..459 CDD:320124 13/33 (39%)
TM helix 7 474..498 CDD:320124 10/24 (42%)
AstA-R1NP_524700.1 7tmA_AstA_R_insect 75..358 CDD:320224 95/307 (31%)
TM helix 1 76..102 CDD:320224 9/25 (36%)
TM helix 2 109..135 CDD:320224 13/25 (52%)
TM helix 3 147..177 CDD:320224 15/29 (52%)
TM helix 4 189..209 CDD:320224 6/19 (32%)
TM helix 5 239..268 CDD:320224 6/28 (21%)
TM helix 6 284..314 CDD:320224 13/29 (45%)
TM helix 7 326..351 CDD:320224 11/27 (41%)

Return to query results.
Submit another query.