DRSC/TRiP Functional Genomics Resources

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Protein Alignment SIFaR and npr-20

DIOPT Version :9

Sequence 1:NP_001163674.1 Gene:SIFaR / 42530 FlyBaseID:FBgn0038880 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_495888.3 Gene:npr-20 / 188226 WormBaseID:WBGene00011578 Length:410 Species:Caenorhabditis elegans


Alignment Length:388 Identity:98/388 - (25%)
Similarity:175/388 - (45%) Gaps:102/388 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 SVDFGFDPLYRHSLAMSMVYCVAYIVVFLVGLIGNSFVIAVVLRAPRMRTVTNYFIVNLAIADIL 256
            ||.|...|..:  :.:.::||    :||:|.|.||...:.|:...|.|||.||:|:.||||||:|
 Worm    20 SVSFIDQPFVK--IPVMIIYC----LVFVVCLSGNFLTLIVMTSHPMMRTPTNFFLSNLAIADLL 78

  Fly   257 VIVFCLPATLI-------GNIFVPWMLGWLMCKFVPYIQGVSVAASVYSLIAVSLDRFIAIWWP- 313
            |.:||:...:|       ||    |.||.:|||....:..:....|...|:.|||:::||:..| 
 Worm    79 VAIFCILQNMIHIVGFDHGN----WPLGPVMCKLYLGLTNIMPCTSAGILVLVSLEKYIAVLHPL 139

  Fly   314 --LKQMTKRRARIMIIGIWVIALVTTIPWLLFFDLVPAEEVFSDALVSAY---SQPQFLCQEVWP 373
              ||.:|.....:..:.:|||:::...|:.|:      .:.::...|||.   |.|      :| 
 Worm   140 SGLKLLTPEHRWVATMIVWVISILVNFPYFLY------AQNYTYLGVSACFRGSMP------IW- 191

  Fly   374 PGTDGNLYFLLANLVACYLLPMSLITLCYV----LIWIKVSTR---------------------- 412
                 |.:    :.:..||:|::.:...|.    |:|...|.|                      
 Worm   192 -----NSF----SFIVWYLIPLTALVFIYSRISHLLWTSDSNRQSSRQSHESNGSLERGNGYANT 247

  Fly   413 SIPGES------------KDAQMDRMQQKSKV-------------KVIKMLVAVVILFVLSWLPL 452
            :.||.|            :::.::..:::.||             ||:::|||||:.|.|...|.
 Worm   248 AQPGSSWQMKNGRIVVYKQESLLNVPKREKKVKEPKRPKDTEGRRKVVRLLVAVVVSFALLTFPH 312

  Fly   453 Y--VIFARIKFGSDISQEEFEILKKVMPVAQWLGSSNSCINPILYS-VNKKYRRGFAAIIKSR 512
            :  :::...:.|:..:.....|.:.:..:..::   :|.||||||: ::|::|...:.:|..|
 Worm   313 HARLLYTSFQTGTICNSNWTMIFQPLSYIFLFI---SSAINPILYACLSKRFRNALSDVIHCR 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SIFaRNP_001163674.1 7tm_4 216..>443 CDD:304433 75/290 (26%)
7tm_1 225..495 CDD:278431 82/335 (24%)
npr-20NP_495888.3 7tmA_Trissin_R 32..365 CDD:320140 92/365 (25%)
TM helix 1 33..57 CDD:320140 9/27 (33%)
TM helix 2 66..88 CDD:320140 12/21 (57%)
TM helix 3 107..129 CDD:320140 4/21 (19%)
TM helix 4 152..168 CDD:320140 3/15 (20%)
TM helix 5 189..212 CDD:320140 6/38 (16%)
TM helix 6 292..317 CDD:320140 10/24 (42%)
TM helix 7 333..358 CDD:320140 8/27 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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