DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3301 and Rdh8

DIOPT Version :10

Sequence 1:NP_650964.1 Gene:CG3301 / 42528 FlyBaseID:FBgn0038878 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_001025461.1 Gene:Rdh8 / 235033 MGIID:2685028 Length:317 Species:Mus musculus


Alignment Length:271 Identity:67/271 - (24%)
Similarity:107/271 - (39%) Gaps:66/271 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RVAVVTGASAGIGAACCRDLV----AKGMVVVGLARREKVLQDIKSSLPADQAA------RFHTR 61
            |..:::|.|:|||......|.    .:..||.       .::|:....|.:.||      .....
Mouse     6 RTVLISGCSSGIGLELALQLAHDPRQRYQVVA-------TMRDLGKKEPLEAAAGEALGKTLSVV 63

  Fly    62 PCDVSNEQQVIDTFAWIDRTLGGADVLVNNAGIIRQMNITDPENS---ADVRAILDVNVLGVTWC 123
            ..||.|::.|.|..:.|:.  |..||||||||:    .:..|...   |.::::.:.|..|....
Mouse    64 QLDVCNDESVTDCLSHIEG--GQVDVLVNNAGV----GLVGPLEGLSLATMQSVFNTNFFGAVRL 122

  Fly   124 TRQWFLSLQRRKVNDGHVVVINSVVGHSVPAVEGFSLN-MYAPSKHAITALTEILRQEFIKKGTQ 187
            .:.....::||:  .||:||::||:|     ::|...| :||.||.|:....|.|..:.  :...
Mouse   123 VKAVLPGMKRRR--QGHIVVVSSVMG-----LQGVMFNDVYAASKFALEGFFESLAIQL--RQFN 178

  Fly   188 TKITSISPGVVATEIFEAGSWEQ----------------------PTGMPMLRS-----EDIADA 225
            ..|:.:.||.|.|: ||.....|                      |....:.||     .|:|..
Mouse   179 IFISMVEPGPVTTD-FEGKLLAQVSKAEFPDTDPDTLGYFRDLYLPASRELFRSVGQSPRDVAQV 242

  Fly   226 VTYCIQT--PP 234
            :...|.|  ||
Mouse   243 IAKVIGTTRPP 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3301NP_650964.1 Rossmann-fold NAD(P)(+)-binding proteins 1..245 CDD:473865 67/271 (25%)
Rdh8NP_001025461.1 Rossmann-fold NAD(P)(+)-binding proteins 6..263 CDD:473865 67/271 (25%)

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