DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AP-2sigma and Ap3s2

DIOPT Version :10

Sequence 1:NP_650961.2 Gene:AP-2sigma / 42525 FlyBaseID:FBgn0043012 Length:142 Species:Drosophila melanogaster
Sequence 2:NP_001108511.1 Gene:Ap3s2 / 683402 RGDID:1586888 Length:193 Species:Rattus norvegicus


Alignment Length:148 Identity:56/148 - (37%)
Similarity:91/148 - (61%) Gaps:6/148 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE------FRNFKIVY 59
            ||:.||:.|..||.||.::|..|.::.:|:::.|...:|..||....||:|      ..::|::|
  Rat     1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIY 65

  Fly    60 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYSVVDEMFLAGEIR 124
            |.||.|||..|||.:::.|..|:.|..|||.|::.|.|||||||:|:..||:.::.|:.:.|.:.
  Rat    66 RHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVL 130

  Fly   125 ETSQTKVLKQLLTLNSLE 142
            ||:..:::.|:...|.||
  Rat   131 ETNMNEIVAQIEAQNRLE 148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AP-2sigmaNP_650961.2 AP2_sigma 1..141 CDD:341437 54/145 (37%)
Ap3s2NP_001108511.1 AP3_sigma 1..146 CDD:341438 53/144 (37%)

Return to query results.
Submit another query.