DRSC/TRiP Functional Genomics Resources

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Protein Alignment AP-2sigma and ap1s3b

DIOPT Version :9

Sequence 1:NP_650961.2 Gene:AP-2sigma / 42525 FlyBaseID:FBgn0043012 Length:142 Species:Drosophila melanogaster
Sequence 2:NP_001004635.1 Gene:ap1s3b / 447897 ZFINID:ZDB-GENE-040912-62 Length:154 Species:Danio rerio


Alignment Length:142 Identity:58/142 - (40%)
Similarity:98/142 - (69%) Gaps:0/142 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGL 65
            |:.|:|:.:|.||.||.||::...:.:::|:::::..:|..|..:..||:.:::.||||:|||.|
Zfish     1 MMHFLLLFSRQGKLRLQKWFLPLPERDRKKIVKDMTTMVLARKPRTCNFMHWKDLKIVYKRYASL 65

  Fly    66 YFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYSVVDEMFLAGEIRETSQTK 130
            |||..::..||.|..||.:|.:||:|::||.||||||::|||.|.|.::||..:.|||:|||:..
Zfish    66 YFCCGLENQDNELLALEILHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFLMGGEIQETSKQS 130

  Fly   131 VLKQLLTLNSLE 142
            :.|.:...:.|:
Zfish   131 IAKSIEASDMLQ 142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AP-2sigmaNP_650961.2 AP2_sigma 1..141 CDD:341437 57/139 (41%)
ap1s3bNP_001004635.1 Clat_adaptor_s 1..142 CDD:250451 57/140 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5030
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53551
OrthoDB 1 1.010 - - D1307450at2759
OrthoFinder 1 1.000 - - FOG0000441
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X298
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.830

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