Protein Alignment Rab1 and YPT52

DIOPT Version :10

• Sequence 1: NP_732610.1
• Gene: Rab1 / 42524
• FlyBaseID: FBgn0285937
• Length: 205
• Species: Drosophila melanogaster
• Sequence 2: NP_012939.1
• Gene: YPT52 / 853884
• SGDID: S000001722
• Length: 234
• Species: Saccharomyces cerevisiae
• Alignment Length: 242
• Identity: 77/242 - (31%)
• Similarity: 118/242 - (48%)
• Gaps: 60/242 - (24%)

  Fly    12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL---DGK-----TIKLQIWDTA 68
            |||:|:|||.||||.::.||..||:.|...||||..|..::|.:   ||.     .||.:|||||
Yeast     4 FKLVLLGDSSVGKSSIVHRFVKDTFDELRESTIGAAFLSQSITIHPNDGNETKDVVIKFEIWDTA 68

  Fly    69 GQERFRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKL--------LVGNK 125
            ||||::::...|||.|:..:||||.|.::|....:.|::|::       ||:        |:|||
Yeast    69 GQERYKSLAPMYYRNANAALVVYDITQEDSLQKARNWVDELK-------NKVGDDDLVIYLLGNK 126

  Fly   126 SDLTTK--------------------KVVDHTTAAEYAAQLGIPFLETSAKSATNVEQAFMTMAA 170
            .||..:                    :.:....|.:||.:.|:.|.|.|||:...|::.|..:..
Yeast   127 VDLCQETPSTETSPDSNEGGDEEQKVRAISTEEAKQYAQEQGLLFREVSAKTGEGVKEIFQDIGE 191

  Fly   171 EI-----------KNR-VGPPSSATDNASKVKIDQGRPVENTKSGCC 205
            ::           :|| :|     ..|..:|.|:..||..|..:.||
Yeast   192 KLYDLKKDEILSKQNRQIG-----GGNNGQVDINLQRPSTNDPTSCC 233

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rab1	NP_732610.1	Rab1_Ypt1	10..175	CDD:206661	66/209 (32%)
YPT52	NP_012939.1	Rab5_related	3..194	CDD:206653	66/196 (34%)