DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and Rab11a

DIOPT Version :10

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_112414.1 Gene:Rab11a / 81830 RGDID:619762 Length:216 Species:Rattus norvegicus


Alignment Length:226 Identity:100/226 - (44%)
Similarity:136/226 - (60%) Gaps:34/226 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSVNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 65
            |.:.:.|||||||::||||||||||.||.||..:.:.....|||||:|..|:|::||||||.|||
  Rat     1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 65

  Fly    66 DTAGQERFRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTT 130
            |||||||:|.|||:|||||.|.::|||.....::.||::||:|:..:|..|:..:||||||||..
  Rat    66 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 130

  Fly   131 KKVVDHTTAAEYAAQLGIPFLETSAKSATNVEQAFMTMAAEI-------------KNRVGPPSS- 181
            .:.|....|..:|.:.|:.|:||||..:||||.||.|:..||             :|.:.|.:: 
  Rat   131 LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNV 195

  Fly   182 -------ATDNASKVKIDQGRPVENTKSGCC 205
                   .|:|..||:             ||
  Rat   196 VPIHVPPTTENKPKVQ-------------CC 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 88/177 (50%)
Rab11aNP_112414.1 Rab11_like 9..173 CDD:206660 88/163 (54%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P62491 36..47 4/10 (40%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P62491 67..86 15/18 (83%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 183..211 5/27 (19%)

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