DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and Rab11b

DIOPT Version :10

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_116006.1 Gene:Rab11b / 79434 RGDID:68369 Length:218 Species:Rattus norvegicus


Alignment Length:218 Identity:98/218 - (44%)
Similarity:134/218 - (61%) Gaps:16/218 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSVNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 65
            |.:.:.|||||||::||||||||||.||.||..:.:.....|||||:|..|:|::||||||.|||
  Rat     1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 65

  Fly    66 DTAGQERFRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTT 130
            |||||||:|.|||:|||||.|.::|||.....::.||::||:|:..:|..|:..:||||||||..
  Rat    66 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 130

  Fly   131 KKVVDHTTAAEYAAQLGIPFLETSAKSATNVEQAFMTMAAE---------IKNRVGPPSSATDNA 186
            .:.|....|..:|.:..:.|:||||..:||||:||..:..|         |.:|.....|..:|.
  Rat   131 LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNV 195

  Fly   187 SKVKI----DQGRPVENTKSGCC 205
            ..:.:    |..:|   .|..||
  Rat   196 VDISVPPTTDGQKP---NKLQCC 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 86/173 (50%)
Rab11bNP_116006.1 Rab11_like 9..173 CDD:206660 86/163 (53%)
Switch 1. /evidence=ECO:0000250|UniProtKB:Q15907 36..47 4/10 (40%)
Switch 2. /evidence=ECO:0000250|UniProtKB:Q15907 67..86 15/18 (83%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 184..218 8/35 (23%)

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