DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and rab40c

DIOPT Version :10

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_001035438.1 Gene:rab40c / 678600 ZFINID:ZDB-GENE-030515-1 Length:279 Species:Danio rerio


Alignment Length:170 Identity:72/170 - (42%)
Similarity:104/170 - (61%) Gaps:1/170 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 72
            ||||.|.||:|||.|||..:|....|.:....|..:.|:|:|..||.|||:.:||::|||:||.|
Zfish    11 YDYLLKFLLVGDSDVGKGEILDSLQDGSAESPYAYSSGIDYKTTTILLDGRRVKLELWDTSGQGR 75

  Fly    73 FRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKVVDHT 137
            |.||..||.|||.||::|||.|::.||:.:.:|:.||:.:| ..|.::||||:..|..|:.|...
Zfish    76 FCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIREIDEHA-PGVPRILVGNRLHLAFKRQVPTE 139

  Fly   138 TAAEYAAQLGIPFLETSAKSATNVEQAFMTMAAEIKNRVG 177
            .|..||.:.|:.|.|.|.....||.::|..::..:..|.|
Zfish   140 QARAYAEKNGMTFFEVSPLCNFNVIESFTELSRIVLMRHG 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 68/164 (41%)
rab40cNP_001035438.1 Rab40 9..279 CDD:133321 72/170 (42%)
SOCS_Rab40 187..229 CDD:239711
Blue background indicates that the domain is not in the aligned region.

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