DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and RAB3B

DIOPT Version :9

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_002858.2 Gene:RAB3B / 5865 HGNCID:9778 Length:219 Species:Homo sapiens


Alignment Length:202 Identity:89/202 - (44%)
Similarity:131/202 - (64%) Gaps:6/202 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 72
            :||:||||:||:|.|||:..|.|:||||:|.:::||:|:|||::|:....|.:||||||||||||
Human    19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER 83

  Fly    73 FRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKVVDHT 137
            :||||::|||||.|.|::||.|::||||.|:.|..:|:.|:.:|...:|||||.|:..::||...
Human    84 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTE 148

  Fly   138 TAAEYAAQLGIPFLETSAKSATNVEQAFMTMAAEIKNRVGPPSSATD-----NASKVKIDQGRPV 197
            .....|.|||..|.|.|||...:|.|||..:...|.:::. .|..||     ::...::....|:
Human   149 KGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS-DSLDTDPSMLGSSKNTRLSDTPPL 212

  Fly   198 ENTKSGC 204
            ......|
Human   213 LQQNCSC 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 83/164 (51%)
RAB3BNP_002858.2 Rab3 22..186 CDD:206657 82/163 (50%)
RAB 23..183 CDD:197555 81/159 (51%)
Effector region. /evidence=ECO:0000250 51..59 3/7 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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