DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and rab8a

DIOPT Version :9

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_001083031.1 Gene:rab8a / 571897 ZFINID:ZDB-GENE-070424-36 Length:207 Species:Danio rerio


Alignment Length:191 Identity:105/191 - (54%)
Similarity:144/191 - (75%) Gaps:5/191 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 72
            |||||||||||||||||:|:|.||::|.:..::|||||:||||||||||||.|||||||||||||
Zfish     5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 69

  Fly    73 FRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKVVDHT 137
            |||||::|||||.||::|||.|:::||:|:|.|:..||.:|..:|.|:::|||.|:..|:.|...
Zfish    70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASADVEKMILGNKCDINEKRQVSKD 134

  Fly   138 TAAEYAAQLGIPFLETSAKSATNVEQAFMTMAAEIKNRV-----GPPSSATDNASKVKIDQ 193
            ...:.|.:.||.|:|||||:..|||.||:|:|.:||.::     |.....:::..|:..:|
Zfish   135 RGEKLALEYGIKFMETSAKANINVENAFLTLARDIKAKMDTKLEGNNPQGSNHGVKITTEQ 195

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 100/164 (61%)
rab8aNP_001083031.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 101/165 (61%)
RAB 9..172 CDD:197555 98/162 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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