DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and rab3ab

DIOPT Version :10

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_001017761.1 Gene:rab3ab / 550457 ZFINID:ZDB-GENE-041210-268 Length:220 Species:Danio rerio


Alignment Length:184 Identity:85/184 - (46%)
Similarity:125/184 - (67%) Gaps:0/184 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SVNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
            |.:..:||:||:|:||:|.|||:..|.|:|||::|.:::||:|:|||::||..:.|.||||||||
Zfish    14 SSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 78

  Fly    68 AGQERFRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKK 132
            |||||:||||::|||||.|.|::||.|::|||..|:.|..:|:.|:.:|...||||||.|:..::
Zfish    79 AGQERYRTITTAYYRGAMGFILMYDITNEESFAAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 143

  Fly   133 VVDHTTAAEYAAQLGIPFLETSAKSATNVEQAFMTMAAEIKNRVGPPSSATDNA 186
            ||......:.:..||..:.|.|||...||:|.|..:...|..::.....|.|.|
Zfish   144 VVASERGRQLSEHLGFEYFEASAKDNINVKQTFERLVDIICEKMSESLDAADPA 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 80/164 (49%)
rab3abNP_001017761.1 Rab3 22..186 CDD:206657 79/163 (48%)

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