DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and rab15

DIOPT Version :10

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_001016372.1 Gene:rab15 / 549126 XenbaseID:XB-GENE-495026 Length:212 Species:Xenopus tropicalis


Alignment Length:207 Identity:89/207 - (42%)
Similarity:136/207 - (65%) Gaps:9/207 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71
            :||.||:|||||||||||:|||.||.|:.:..|:|||||||||::|||:||..:::|||||||||
 Frog     4 QYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHPSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 68

  Fly    72 RFRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKVVDH 136
            |::|||..|||.|.||.:|||.|.:.|:.::.:|..:::.||.:.|.|:|:|||:|...|:.|..
 Frog    69 RYQTITKQYYRRAQGIFLVYDITSERSYQHIMKWASDVDEYAPDGVQKILIGNKADEEQKRQVGK 133

  Fly   137 TTAAEYAAQLGIPFLETSAKSATNVEQAF-----MTMAAEIKNRVGPPSSATD--NASKVKIDQG 194
            ....:.|.:.|:.|.||||.:..|::::|     :.:.|..:...|...|:.|  |.::::.|..
 Frog   134 NQGMKLAEEYGMDFFETSACTNYNIKESFTRLTELVLMAHKRELEGLRMSSADELNLAELEDDGS 198

  Fly   195 RP--VENTKSGC 204
            :.  :.|:...|
 Frog   199 KSDGMANSSKSC 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 80/169 (47%)
rab15NP_001016372.1 Rab15 9..172 CDD:206698 78/162 (48%)

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