DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and rab15

DIOPT Version :9

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_001016372.1 Gene:rab15 / 549126 XenbaseID:XB-GENE-495026 Length:212 Species:Xenopus tropicalis


Alignment Length:207 Identity:89/207 - (42%)
Similarity:136/207 - (65%) Gaps:9/207 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71
            :||.||:|||||||||||:|||.||.|:.:..|:|||||||||::|||:||..:::|||||||||
 Frog     4 QYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHPSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 68

  Fly    72 RFRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKVVDH 136
            |::|||..|||.|.||.:|||.|.:.|:.::.:|..:::.||.:.|.|:|:|||:|...|:.|..
 Frog    69 RYQTITKQYYRRAQGIFLVYDITSERSYQHIMKWASDVDEYAPDGVQKILIGNKADEEQKRQVGK 133

  Fly   137 TTAAEYAAQLGIPFLETSAKSATNVEQAF-----MTMAAEIKNRVGPPSSATD--NASKVKIDQG 194
            ....:.|.:.|:.|.||||.:..|::::|     :.:.|..:...|...|:.|  |.::::.|..
 Frog   134 NQGMKLAEEYGMDFFETSACTNYNIKESFTRLTELVLMAHKRELEGLRMSSADELNLAELEDDGS 198

  Fly   195 RP--VENTKSGC 204
            :.  :.|:...|
 Frog   199 KSDGMANSSKSC 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 80/169 (47%)
rab15NP_001016372.1 Rab15 9..172 CDD:206698 78/162 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1149105at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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