DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and zgc:101559

DIOPT Version :9

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_001007418.1 Gene:zgc:101559 / 492776 ZFINID:ZDB-GENE-041114-122 Length:233 Species:Danio rerio


Alignment Length:189 Identity:82/189 - (43%)
Similarity:113/189 - (59%) Gaps:13/189 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 EYD----YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
            |||    .:||:::||||.|||:||..||....:..:..:||||||:.||::|||:.||||||||
Zfish    28 EYDGPQARVFKIIVIGDSNVGKTCLTYRFCGGKFLSNPEATIGVDFRERTLQLDGENIKLQIWDT 92

  Fly    68 AGQERFR-TITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYAC-ENVNKLLVGNKSDLTT 130
            ||||||| ::...|||..|.||.|||.|...||.::.:|:||...::. ..|.::|||||.||..
Zfish    93 AGQERFRKSMVEHYYRNVHAIIFVYDVTSLASFESLPEWIEECNHHSVPPMVPRILVGNKCDLRE 157

  Fly   131 KKVVDHTTAAEYAAQLGIPFLETSAKSAT---NVEQAFMTMAAEIKN----RVGPPSSA 182
            .:.|....|...|.....|..||||:...   :|:..|:|:|..:||    |:..||.:
Zfish   158 SREVSTFLAQRLADSYNFPLFETSARDLAEKEHVDAIFLTLAYRLKNHRPLRLKQPSES 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 76/173 (44%)
zgc:101559NP_001007418.1 Rab33B_Rab33A 35..204 CDD:133315 74/168 (44%)
RAB 37..204 CDD:197555 74/166 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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