DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and rab3aa

DIOPT Version :10

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_001003419.1 Gene:rab3aa / 445024 ZFINID:ZDB-GENE-040801-2 Length:220 Species:Danio rerio


Alignment Length:182 Identity:86/182 - (47%)
Similarity:125/182 - (68%) Gaps:0/182 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SVNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
            |....:||:||:|:||:|.|||:..|.|:|||::|.:::||:|:|||::||..:.|.||||||||
Zfish    14 SAEQNFDYMFKVLIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 78

  Fly    68 AGQERFRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKK 132
            |||||:||||::|||||.|.|::||.|:::|||.|:.|..:|:.|:.:|...||||||.|:..::
Zfish    79 AGQERYRTITTAYYRGAMGFILMYDITNEDSFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 143

  Fly   133 VVDHTTAAEYAAQLGIPFLETSAKSATNVEQAFMTMAAEIKNRVGPPSSATD 184
            ||......:.:.|||..|.|.|||...||:|.|..:...|..|:.....:.|
Zfish   144 VVAGQRGRQLSEQLGFEFFEASAKDNINVKQTFERLVDVICERMSENLESAD 195

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 82/164 (50%)
rab3aaNP_001003419.1 Rab3 22..186 CDD:206657 81/163 (50%)

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