DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and rab40b

DIOPT Version :10

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_001002524.2 Gene:rab40b / 436797 ZFINID:ZDB-GENE-040718-257 Length:287 Species:Danio rerio


Alignment Length:178 Identity:76/178 - (42%)
Similarity:110/178 - (61%) Gaps:5/178 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SSVNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 66
            ||....||:|.|.||:|||.|||..:|....|.:....|...:|:|:|..||.|||:.:|||:||
Zfish    13 SSPAKAYDFLLKFLLVGDSDVGKGEILASLQDGSSESPYGYNMGIDYKTTTILLDGRRVKLQLWD 77

  Fly    67 TAGQERFRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTK 131
            |:||.||.||..||.|||.|:|:|||.|::.||:.:.:|::||:.:| ..|.|:||||:..|..|
Zfish    78 TSGQGRFCTIFRSYSRGAQGVILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAYK 141

  Fly   132 KVV--DHTTAAEYAAQLGIPFLETSAKSATNVEQAFMTMAAEIKNRVG 177
            :.|  :||.|  :..:||:.|.|.|.....|:.::|..:|..:..|.|
Zfish   142 RQVTTEHTQA--FVERLGVTFFEVSPLCNFNITESFTELARIVLMRHG 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 70/166 (42%)
rab40bNP_001002524.2 Rab40 17..194 CDD:133321 74/174 (43%)
SOCS_Rab40 195..237 CDD:239711
Blue background indicates that the domain is not in the aligned region.

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