DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and rab41

DIOPT Version :10

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_998530.1 Gene:rab41 / 406674 ZFINID:ZDB-GENE-040426-2686 Length:211 Species:Danio rerio


Alignment Length:193 Identity:73/193 - (37%)
Similarity:122/193 - (63%) Gaps:0/193 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 76
            |||:.:|:..|||:.|:.||..|::..:|.:|||:||..:|:.|:.:|::||:||||||||||::
Zfish    17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 81

  Fly    77 TSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKVVDHTTAAE 141
            ..||.|.:...:||||.|:..||....:|::::......:|..:|||||:||..|:.|....|.:
Zfish    82 IPSYIRDSTIAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLGDKRQVSVEAAEK 146

  Fly   142 YAAQLGIPFLETSAKSATNVEQAFMTMAAEIKNRVGPPSSATDNASKVKIDQGRPVENTKSGC 204
            .|.:||:.::|||||:..||:|.|..:||.:......|..:.::...:|:::...:..|:|.|
Zfish   147 KARELGVMYIETSAKAGYNVKQLFRRVAAALPGMDSTPEKSKEDMIDIKLEKPPELPVTESSC 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 68/162 (42%)
rab41NP_998530.1 Rab6 17..177 CDD:206654 68/159 (43%)

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