DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and rab1ab

DIOPT Version :10

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_001007162.1 Gene:rab1ab / 368883 ZFINID:ZDB-GENE-030616-564 Length:201 Species:Danio rerio


Alignment Length:202 Identity:169/202 - (83%)
Similarity:182/202 - (90%) Gaps:1/202 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 68
            :||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Zfish     1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 65

  Fly    69 GQERFRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKV 133
            ||||||||||||||||||||||||.|||||||||||||:||:|||.|||||||||||.|||||||
Zfish    66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV 130

  Fly   134 VDHTTAAEYAAQLGIPFLETSAKSATNVEQAFMTMAAEIKNRVGPPSSATDNASKVKIDQGRPVE 198
            ||:|||.|:|..|||||||||||:||||||||||||||||.|:||.::|..:...:|| :..||:
Zfish   131 VDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATAGGSEKTMKI-ESTPVK 194

  Fly   199 NTKSGCC 205
            ....|||
Zfish   195 PASGGCC 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 153/164 (93%)
rab1abNP_001007162.1 Rab1_Ypt1 7..172 CDD:206661 153/164 (93%)

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