DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and Rab39

DIOPT Version :9

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_001245568.1 Gene:Rab39 / 31684 FlyBaseID:FBgn0029959 Length:218 Species:Drosophila melanogaster


Alignment Length:224 Identity:89/224 - (39%)
Similarity:127/224 - (56%) Gaps:29/224 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDT 67
            |.|.::|.|:|:|||||.||||.||..|.|..:.|....|:||||..|.||: ||..||||:|||
  Fly     2 VEPIFEYQFRLILIGDSTVGKSSLLKFFTDGKFAELSDPTVGVDFFARLIEMKDGTQIKLQLWDT 66

  Fly    68 AGQERFRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERY-----------ACENVNKLL 121
            |||||||:||.||||.:.|:::|||.::..||.::..|:.|.:|:           .|: ::.:.
  Fly    67 AGQERFRSITKSYYRNSVGVLLVYDISNHASFEHIPLWMMEAQRHIEPHRPVFALVGCK-LDLIN 130

  Fly   122 VGNKSDLTTKKVVDHTTAAEYAAQLGIPFLETSAKSATNVEQAFMTMAAEIKNRV-GPPSSATDN 185
            .|...::||::      |.::|.|.|:.|:||||:|..|||:||..:..|:..|: .....|.|.
  Fly   131 AGGHREVTTEE------AQKFAKQHGLHFVETSARSGANVEEAFRMVTQEVYARIRSGEYKAEDG 189

  Fly   186 ASKVKIDQGRP---------VENTKSGCC 205
            ...:|....||         .|..||.||
  Fly   190 WDGIKSGFSRPNSLDFNLVVAEPEKSSCC 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 76/176 (43%)
Rab39NP_001245568.1 Rab39 8..218 CDD:133311 85/216 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454475
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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