DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and Rab2b

DIOPT Version :10

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:XP_063130300.1 Gene:Rab2b / 305853 RGDID:1309117 Length:225 Species:Rattus norvegicus


Alignment Length:232 Identity:96/232 - (41%)
Similarity:135/232 - (58%) Gaps:43/232 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT----- 67
            |.||||.::|||:|||||||||:|.|..:...:..||||:|..|.:.:|||.||||||||     
  Rat     3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTNSEPE 67

  Fly    68 -----AGQERFRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSD 127
                 ||||.||:||.||||||.|.::|||.|.:|:||::..|||:..:::..|:..:|:|||||
  Rat    68 PSYLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 132

  Fly   128 LTTKKVVDHTTAAEYAAQLGIPFLETSAKSATNVEQAFMTMAAEIKN----------------RV 176
            |.:::.|.......:|.:.|:.|:|||||:|.|||:|::..|.||..                ::
  Rat   133 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIHRKIQQGLFDVHNEANGIKI 197

  Fly   177 GP--------PSSATDNASKVKIDQGRPVENTKSGCC 205
            ||        |..:..|:|.:..|         ||||
  Rat   198 GPQQSISLVGPCPSQQNSSDIGPD---------SGCC 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 85/190 (45%)
Rab2bXP_063130300.1 None

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