DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and Rab15

DIOPT Version :9

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_942044.1 Gene:Rab15 / 299156 RGDID:735172 Length:212 Species:Rattus norvegicus


Alignment Length:209 Identity:90/209 - (43%)
Similarity:140/209 - (66%) Gaps:10/209 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71
            :||.||:|||||||||||:|||.||.|:.:..|:|||||||||::|||:||..:::|||||||||
  Rat     4 QYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 68

  Fly    72 RFRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKVVDH 136
            |::|||..|||.|.||.:|||.:.:.|:.::.:|:.:::.||.|.|.|:|:|||:|...|:.|..
  Rat    69 RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGR 133

  Fly   137 TTAAEYAAQLGIPFLETSAKSATNVEQAF-----MTMAAEIKNRVGPPSSATDNASKVKI--DQG 194
            ....:.|.:.|:.|.||||.:..|::::|     :.:.|..|...|..:.|::..:..::  |:|
  Rat   134 EQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVLQAHRKELDGLRTCASNELALAELEEDEG 198

  Fly   195 R---PVENTKSGCC 205
            :   |..::|:..|
  Rat   199 KTEGPANSSKTCWC 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 81/169 (48%)
Rab15NP_942044.1 Rab15 9..172 CDD:206698 78/162 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1149105at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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