DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab1 and Rab8b

DIOPT Version :9

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:XP_038936858.1 Gene:Rab8b / 266688 RGDID:628764 Length:208 Species:Rattus norvegicus


Alignment Length:201 Identity:112/201 - (55%)
Similarity:148/201 - (73%) Gaps:4/201 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 72
            |||||||||||||||||:|||.||::|.:..::|||||:||||||||||||.|||||||||||||
  Rat     5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 69

  Fly    73 FRTITSSYYRGA-HGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKVVDH 136
            |||||::||||| .||::|||.|:::||:|:|.|:..||.:|..:|.::::|||.|:..|:.|..
  Rat    70 FRTITTAYYRGAMQGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSK 134

  Fly   137 TTAAEYAAQLGIPFLETSAKSATNVEQAFMTMAAEIK---NRVGPPSSATDNASKVKIDQGRPVE 198
            ....:.|...||.||||||||:||||:||.|:|.:|.   ||....|:::.....|||.:.|..:
  Rat   135 ERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITESRSKK 199

  Fly   199 NTKSGC 204
            .:...|
  Rat   200 TSFFRC 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 102/168 (61%)
Rab8bXP_038936858.1 Rab8_Rab10_Rab13_like 6..173 CDD:206659 103/166 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.