DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and ypt2

DIOPT Version :9

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_594580.1 Gene:ypt2 / 2543280 PomBaseID:SPAC9E9.07c Length:200 Species:Schizosaccharomyces pombe


Alignment Length:199 Identity:112/199 - (56%)
Similarity:149/199 - (74%) Gaps:5/199 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 72
            ||||.|||||||||||||||||||::|::|.|:|:|||:||||||||||||.|||||||||||||
pombe     6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70

  Fly    73 FRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKVVDHT 137
            |||||::|||||.||:::||.||::||:||:.|...:|::|.|||.|:|:|||.|...::.|...
pombe    71 FRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFE 135

  Fly   138 TAAEYAAQLGIPFLETSAKSATNVEQAFMTMAAEI-KNRVGPPSSATDNASKVKIDQGRPVENTK 201
            .....|.:||:.|||.|||:..||::||.|:|.|| |.::...:..::.|:.|.:...|.|:.  
pombe   136 QGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVDLGNDRTVKR-- 198

  Fly   202 SGCC 205
              ||
pombe   199 --CC 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 104/165 (63%)
ypt2NP_594580.1 Rab8_Rab10_Rab13_like 7..173 CDD:206659 104/165 (63%)
Ras 11..172 CDD:278499 101/160 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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