DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and Rabl6

DIOPT Version :10

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_001019787.2 Gene:Rabl6 / 227624 MGIID:2442633 Length:725 Species:Mus musculus


Alignment Length:182 Identity:37/182 - (20%)
Similarity:80/182 - (43%) Gaps:39/182 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT----IKLQIWDTAGQ 70
            |..|:::.||...||:.|..|.....:.|.||.|  .:.::.:|..:.||    :|:::||...:
Mouse    42 YNMKIVIRGDRNTGKTALWHRLQGKKFVEEYIPT--QEIQVTSIHWNYKTTDDVVKVEVWDVVDK 104

  Fly    71 ERFR-------------------TITSSY---YRGAHGIIVVYDCTDQESFNNVKQWLEEIERYA 113
            .:.:                   .:.:.:   |:..:|:::::|.|.|.:||.|.:.|.::..: 
Mouse   105 GKCKKRGDGLKTENDPQEAESELALDAEFLDVYKNCNGVVMMFDITKQWTFNYVLRELPKVPTH- 168

  Fly   114 CENVNKLLVGNKSDLTTKKVVDHTTAAEYAAQLGIP-------FLETSAKSA 158
               |...::||..|:...:|:......::...|..|       :.|:|.|::
Mouse   169 ---VPVCVLGNYRDMGEHRVILPDDVRDFIEHLDRPPGSSYFRYAESSMKNS 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 37/182 (20%)
Rabl6NP_001019787.2 Small GTPase-like 39..279 37/182 (20%)
P-loop containing Nucleoside Triphosphate Hydrolases 44..221 CDD:476819 36/180 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 281..364
PHA03307 283..>611 CDD:223039
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 378..725
Interaction with CDKN2A. /evidence=ECO:0000250 652..690
Blue background indicates that the domain is not in the aligned region.

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