DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab1 and Rab33a

DIOPT Version :10

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:XP_036017751.1 Gene:Rab33a / 19337 MGIID:109493 Length:258 Species:Mus musculus


Alignment Length:117 Identity:50/117 - (42%)
Similarity:68/117 - (58%) Gaps:5/117 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 LQIWDTAGQERFR-TITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACEN-VNKLLVGN 124
            :|:|||||||||| ::...|||..|.::.|||.|...||.|:|.|::|...:|... |.|:||||
Mouse   108 VQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGN 172

  Fly   125 KSDLTTKKVVDHTTAAEYAAQLGIPFLETSA---KSATNVEQAFMTMAAEIK 173
            |.||..:..|....|.::|....:...||||   |.:.|||..||.:|..:|
Mouse   173 KCDLREQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLK 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 50/117 (43%)
Rab33aXP_036017751.1 P-loop containing Nucleoside Triphosphate Hydrolases <108..225 CDD:476819 50/117 (43%)

Return to query results.
Submit another query.