DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and Rab23

DIOPT Version :10

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_033025.2 Gene:Rab23 / 19335 MGIID:99833 Length:237 Species:Mus musculus


Alignment Length:236 Identity:68/236 - (28%)
Similarity:111/236 - (47%) Gaps:44/236 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71
            :.:...|::::|:..||||.::.|:....:|:.|..||||||..|.|:::.:.::|.:|||||||
Mouse     5 DMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 69

  Fly    72 RFRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACE--NVNKLLVGNKSDLTTKKVV 134
            .|..||.:|||||...::|:..||:|||..:..|.|::   ..|  ::...||.||.||.....:
Mouse    70 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV---VAEVGDIPTALVQNKIDLLDDSCI 131

  Fly   135 DHTTAAEYAAQLGIPFLETSAKSATNVEQAFMTMA-----------------------------A 170
            .:..|...|.:|.:.|..||.|...||.:.|..:|                             |
Mouse   132 KNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQKLKQQITEDPEQTHSSSNKIGVFNA 196

  Fly   171 EIKNRVGPPSSATDNASKVKIDQGRP-------VENTKSGC 204
            .:::.:|..||:.:....:.:   ||       ..|..|.|
Mouse   197 SVRSHLGQNSSSLNGGDVINL---RPNKQRTKRTRNPFSSC 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 60/195 (31%)
Rab23NP_033025.2 Rab23_like 10..169 CDD:133306 59/161 (37%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P20340 28..46 7/17 (41%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P20340 65..84 13/18 (72%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 204..237 7/34 (21%)

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